plot_mutations_in_flanked_sites: Visualize mutations in sites and flanks

In reimandlab/RM2: Regression Models For Localised Mutations

Visualize mutations in sites and flanks

Description

Barplot of mutations along relative positions to site midpoints

Usage

plot_mutations_in_flanked_sites(
  dfr,
  window_size = 100,
  what_plot = "mut_freq",
  y_range = NULL
)

Arguments

dfr	Data frame of mutation counts at relative positions along stacked sites/flanks (from get_mutations_in_flanked_sites) dist relative position of mutations mut_count number of mutations at relative position is_site boolean indicating whether the relative position is within the site mut_freq frequency of mutations, calculated as mut_count / n_patients / total bp * 1e6 by get_mutations_in_flanked_sites
window_size	Integer indicating the half-width of sites and flanking regions (added to both sides of midpoint)
what_plot	Character indicating y-axis variable (default "mut_freq")
y_range	Numeric y-axis limits (default NULL)

Value

ggplot object

reimandlab/RM2 documentation built on Aug. 13, 2022, 12:22 p.m.