MURP: MURP

In renjun0324/MURP: MURP (One Line, Title Case)

MURP

Description

This new method is optimized from the MURP algorithm, it's more efficient. Loglike: Prior probability estimated by likelyhood function; MURP: Bayesian Information Criterions value; Recommended_K: Recommended K value.

Usage

MURP(
  Data,
  omega = 1/6,
  iter = 20,
  cores = 1,
  seed = 723,
  fast = FALSE,
  cluster_iter_max = 1000
)

Arguments

Data	expression matrix with Cells * Genes
omega	omega value in pseudo-BIC calculating
iter	the number of iterations
cores	the number of cores to use in multi-threads calculating, default is 1. Multi-threaded calculation is not recommended except for users with server support
seed	random seed, default is 723
fast	speed up calculations
cluster_iter_max	kmeans iterations
type	data type, "expr" or "pca"

Value

a list include recommend_K, object of clustering result and so on

renjun0324/MURP documentation built on Jan. 30, 2023, 5:58 p.m.