murp_specific: BicSpan

In renjun0324/MURP: MURP (One Line, Title Case)

BicSpan

Description

Calculate the pseu-BIC value under different K. Loglike: Prior probability estimated by likelyhood function; MURP: Bayesian Information Criterions value; Recommended_K: Recommended K value.

Usage

murp_specific(
  Data = NULL,
  cores = NULL,
  omega = NULL,
  K = NULL,
  seed = 723,
  cluster_iter_max = 1000
)

Arguments

Data	expression matrix with Cells * Genes
cores	the number of cores to use in multi-threads calculating, default is 1. I do not recommend using multi-threaded calculations on a local computer, but if you have server support, you can try.
omega	omega value in pseudo-BIC calculating
K	the number of specified clusters
seed	random seed, default is 723
cluster_iter_max	kmeans iterations

Value

a list include recommend_K, object of clustering result and so on

renjun0324/MURP documentation built on Jan. 30, 2023, 5:58 p.m.