get_parameters: Default parameters for SIR model

Description Usage Arguments Value

View source: R/parameters.R

Description

Default parameters for SIR model

Usage

1
get_parameters(overrides = list())

Arguments

overrides

use a named parameter list instead of defaults Parameters defined below

  • pars list of parameters Compartmental

  • beta contact rate

  • nu rate of recovery

  • mu rate of death

  • prop_immune proportion of people who are immune

  • N number of people being investigated

  • num used for countlim/num time points

  • I0 initial number of infected people

  • dt time step

  • I0_at_steady_state boolean value

  • n_deaths_S number of deaths at susceptible stage

  • n_infections_S number of infections at susceptible stage

  • n_deaths_I number of deaths at infected stage

  • n_recoveries_I number of recoveries at infected stage

  • n_deaths_R number of deaths at recovered stage

  • n_births number of births Individual only

  • variations any variations to take into account FALSE if not

  • average_age average age for population

  • includeage TRUE if age used

  • includebirth TRUE if immunity used

  • includeimmune TRUE if immunity used

  • includelocation TRUE if location used

  • infection_rate rate of infection

  • recovery_rate rate of recovery

Value

list


reside-ic/sirstochastic documentation built on Oct. 28, 2020, 12:33 a.m.