repo.abd: Automatic report for an augmented block design (ABD)

In reyzaguirre/pepa: Package for the Execution of Pre Cooked Analysis

Automatic report for an augmented block design (ABD)

Description

Produces an automatic report for selected traits in an experiment with an ABD.

Usage

repo.abd(
  traits,
  geno,
  rep,
  dfr,
  title = "Automatic report for an Augmented Block Design (ABD)",
  subtitle = NULL,
  author = "International Potato Center",
  format = c("html", "word", "pdf"),
  server = FALSE,
  server_dir_name = "directory",
  server_file_name = "filename"
)

Arguments

traits	The traits to analize.
geno	The genotypes.
rep	The replications.
dfr	The name of the data frame.
title	Report title.
subtitle	Report subtitle.
author	Report author.
format	The output file format for the report, "html" by default. Other options are "word" and "pdf".
server	Logical. If "FALSE" works with local machines. Otherwise works in server environments.
server_dir_name	If "server = TRUE", this is the directory name in the server.
server_file_name	If "server = TRUE", this is the file name in the server.

Details

It fits a linear model for an ABD and explains the results.

Value

It returns an explanation about the ABD fitted model.

Author(s)

Raul Eyzaguirre.

Examples

# A subset that looks like an ABD
temp <- pjpz09[c(1, 2, 9, 10, 13, 14, 27, 29, 31, 33, 35, 37, 40, 42, 44, 46, 48, 50, 169, 170), ]
repo.abd(c("trw", "vw"), "geno", "rep", temp)
# With some missing values
temp[c(1, 2, 3), "trw"] <- NA
temp[c(1, 10, 15), "vw"] <- NA
repo.abd(c("nocr", "trw", "vw"), "geno", "rep", temp)

reyzaguirre/pepa documentation built on April 20, 2024, 3:50 a.m.