display: Interactive MultiAssayExperiment Explorer

In rformassspectrometry/QFeatures: Quantitative features for mass spectrometry data

Interactive MultiAssayExperiment Explorer

Description

A shiny app to browser and explore the assays in an MultiAssayExperiment object. Each assay can be selected from the dropdown meny in the side panel, and the quantitative data and row metadata are displayed in the respective Assay and Row data tabs. The Heatmap tab displays a heatmap of the assay. The selection of rows in the Row data table is used to subset the features displayed in the Assay table and the heatmap to those currectly selected. See QFeatures for an example.

Usage

display(object, n = 100, ...)

Arguments

object	An instance inheriting from MultiAssayExperiment.
n	A numeric(1) indicating the maximum number of features (rows) to consider before disabling row clustering and displaying feature names for speed purposes. Default is 100.
...	Additional parameters (other than Rowv and labRow, which are set internally based on the value of n) passed to heatmap.

Value

Used for its side effect.

Author(s)

Laurent Gatto

Examples

## Not run: 
data(feat2)
display(feat2)

## End(Not run)

rformassspectrometry/QFeatures documentation built on Sept. 18, 2024, 10:39 p.m.