Man pages for rhondabacher/SCnorm
Normalization of single cell RNA-seq data
| correctWithin | correctWithin |
| evaluateK | Evaluate normalization using K slope groups |
| ExampleSimSCData | Example datasets for SCnorm |
| generateEvalPlot | Internal plotting function. |
| getCounts | getCounts |
| getDens | getDens |
| getSlopes | Estimate gene specific count-depth relationships |
| GetTD | Fit group regression for specific quantile and degree |
| normWrapper | Iteratively fit group regression and evaluate to choose... |
| plotCountDepth | Evaluate the count-depth relationship before (or after)... |
| plotWithinFactor | Evaluate gene-specific factors in the the data. |
| quickReg | quickReg |
| redoBox | redoBox |
| results | results |
| scaleNormMultCont | Scale multiple conditions |
| SCnorm | SCnorm |
| SCnormFit | Fit group quantile regression for K groups |
| splitGroups | splitGroups |
