generateEvalPlot: Internal plotting function.

In rhondabacher/SCnorm: Normalization of single cell RNA-seq data

Internal plotting function.

Description

Genes are divided into NumExpressionGroups = 10 equally sized groups based on their non-zero median expression. Slope densities are plot for each group.

Usage

generateEvalPlot(
  MedExpr,
  SeqDepth,
  Slopes,
  Name,
  NumExpressionGroups = 10,
  BeforeNorm = TRUE
)

Arguments

MedExpr	non-zero median expression for all genes.
SeqDepth	sequencing depth for each cell/sample.
Slopes	per gene estimates of the count-depth relationship.
Name	name for plot title.
NumExpressionGroups	the number of groups to split the data into, genes are split into equally sized groups based on their non-zero median expression.
BeforeNorm	whether dat have already been normalized.

Value

a plot of the un-normalized slope densities.

Author(s)

Rhonda Bacher

rhondabacher/SCnorm documentation built on July 8, 2023, 11:36 p.m.