Man pages for rhondabacher/scaffold
Simulation framework that models each step of a single-cell RNA-seq experiment
| amplifyStep | The second amplification step |
| captureStep | Capture cDNA from cell (cell lysis and conversion of mRNA to... |
| estimateCaptureEff | Estimate capture efficiency for simulated data method to... |
| estimateScaffoldParameters | Estimate or set all parameters for Scaffold simulation. |
| generateDynamicGeneCounts | Generate a dynamic cell population |
| generateGeneCounts | Generate initial counts |
| makePlots | Generate summary plots of simulated data |
| preamplifyStep | Pre-amplification step |
| ScaffoldParams-class | S4 object for Scaffold simulation parameters |
| sequenceStep10X | Sequencing step of the Scaffold simulation for 10X/droplet |
| sequenceStepC1 | Sequencing step of the Scaffold simulation |
| simulateScaffold | Run a Scaffold simulation. |
| uneq_ec_data | An example, unprocessed single-cell data set |
