generateGeneCounts: Generate initial counts

In rhondabacher/scaffold: Simulation framework that models each step of a single-cell RNA-seq experiment

Generate initial counts

Description

Generates the transcripts in the cell.

Usage

generateGeneCounts(numCells, mu, popHet)

Arguments

numCells	The number of cells to generate counts for.
mu	a vector containing the mean of each gene to simulate counts for.
popHet	the degree of heterogeneity within the cell population. Should be a vector of length two specifying the bounds.

Value

Output is matrix of counts, genes on the rows and cells on the columns.

rhondabacher/scaffold documentation built on Sept. 6, 2024, 4:53 p.m.