simulateScaffold: Run a Scaffold simulation.

In rhondabacher/scaffold: Simulation framework that models each step of a single-cell RNA-seq experiment

Run a Scaffold simulation.

Description

Run a Scaffold simulation.

Usage

simulateScaffold(
  scaffoldParams,
  originalSCE,
  inputInitial = NULL,
  outInitial = FALSE
)

Arguments

scaffoldParams	An object of class ScaffoldParams. Generated using the Scaffold::estimateScaffoldParameters function.
originalSCE	The SingleCellExperiment used to create the scaffoldParams object.
inputInitial	A optional matrix of initial gene counts which should have the same dimension indicated in the scaffoldParams parameter. If left NULL, the initial counts will be generated according to the distribution indicated by the model parameter. This is mainly used in simulations to isolate the effects of each step without regenerating a new initial mRNA counts.

rhondabacher/scaffold documentation built on Sept. 6, 2024, 4:53 p.m.