Man pages for riccardo-trozzo/BlissR
Package to analyse Bliss-seq data after BLISS-seq preprocessing pipeline
| add_cancer_gene_census | add cancer gene census annotation |
| add_cpg_islands | add cpg islands annotation |
| add_repeat_masker_table | add repeat masker table annotation |
| annotation_pie | A pie plot of annotation regions frequencies generator |
| coverage_plot | A coverage bar plot generator |
| DSBs_per_gene_length | A gene length bin frequency bar plot generator |
| find_maximum | A Venn diagram generator function |
| genes_venn | A sub function needed to plot venn diagrams of genes |
| load_annotated_peaks | Load several annotated peak files |
| load_bams | Load several bam files |
| plot_density | A density plot of reads over chromosomes generetor A function... |
| plot_selection_frequencies | A bar plot generator function |
| plot_venn | A sub function needed to plot venn diagrams of peaks |
| venn_generator | A Venn diagram generator function |
