add_cpg_islands: add cpg islands annotation
In riccardo-trozzo/BlissR: Package to analyse Bliss-seq data after BLISS-seq preprocessing pipeline

This function allows you to add to the annotation table the cpg islands information of the gene

1	add_cpg_islands(samples, genome = "hg38", cpg_annots)

`samples`	list of annotated peaks
`genome`	hg38 or mm10, based on organism on sample table
`cpg_annots`	the kind of annotation that you want, based also on the genome

1	add_cpg_islands(samples, genome, cpg_annots)

riccardo-trozzo/BlissR documentation built on Aug. 1, 2020, 12:23 a.m.

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