read.bioArgo: Read an MBARI BioArgo file
In richardsc/mbari: Read MBARI-formatted BioArgo files

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/bioArgo.R

Reads a "Bio-Argo" formatted file into an oce argo object.

1	read.bioArgo(file, url = FALSE, cache = FALSE)

`file`	local filename or connection from which to read data. In the case where the argument `url=TRUE`, it can specify the float file without the `.TXT` extention.
`url`	logical indicating if the file should be obtained directly via download from the MBARI website. Will also check to see if there is a locally cached copy in the current working directory (see `cache` argument).
`cache`	ignored if `url=FALSE`. Logical indicating if the downloaded file should be cached locally.

Reads the plain-text csv files obtained from http://www.mbari.org/science/upper-ocean-systems/chemical-sensor-group/floatviz/

An oce argo object, containing the extra data columns corresponding to the biological data.

Clark Richards, Dan Kelley, Cara Wilson

read.argo, as.argo, and as.section from the oce package

d <- read.bioArgo(system.file("extdata", "5145HawaiiQc.txt", package="bioArgo"))
ds <- as.section(d)
par(mfrow=c(2, 1))
plot(d)
plot(ds, xtype='time', which='oxygen')