Files in richardslab/MRutils
Utility functions for preparing data for Two-Sample MR
.Rbuildignore
.Rprofile
.github/.gitignore
.github/workflows/check-release.yaml
.github/workflows/docker-build-push.yaml
.github/workflows/lint.yaml
.github/workflows/python-package-conda.yaml
.github/workflows/shellcheck.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
MRutils.Rproj
NAMESPACE
R/definitions.R
R/demo_data.R
R/fbind.R
R/proxy_search.R
R/rsid_search.R
R/utils-pipe.R
R/utils-vin.R
R/utils.R
R/variant_extraction.R
README.md
data/demo_data.rda
inst/WORDLIST
inst/extdata/COVID_partial_gwas_hg37.txt.gz
inst/extdata/COVID_partial_gwas_hg37.txt.gz.tbi
installation/.Rprofile
installation/.gitignore
installation/01-install_conda.sh
installation/02.1-prepare_yaml.sh
installation/02.2-create_env.sh
installation/03-post_conda_steps.sh
installation/Dockerfile
installation/environment.yaml
installation/linux_env.yml
installation/post_conda_steps.R
man/allele_validator.Rd
man/assert_chr.Rd
man/assert_gwas.Rd
man/assert_probabilities.Rd
man/assert_rsids.Rd
man/assert_valid_data.Rd
man/choose_best_proxies.Rd
man/chr_validator.Rd
man/demo_data.Rd
man/extract_snps_from_bgzip.Rd
man/fill_gwas_unknown_rsids.Rd
man/filter_and_write_exposure_data.Rd
man/fix_proxy_alleles.Rd
man/get_2smr_results.Rd
man/get_LD_pairs.Rd
man/get_cached_rsid_from_position.Rd
man/get_proxies.Rd
man/get_rsid.Rd
man/get_rsid_from_position.Rd
man/get_unknown_rsids_from_locus.Rd
man/gwas_types_validator.Rd
man/gwas_validator.Rd
man/locus_validator.Rd
man/merge_rsids_into_gwas.Rd
man/not_in.Rd
man/palindromic.Rd
man/pipe.Rd
man/proxy_allele_validator.Rd
man/proxy_stats_validator.Rd
man/prune_snps.Rd
man/remove_linked_snps.Rd
man/replace_alleles.Rd
man/required_headers.Rd
man/rsid_validator.Rd
man/stats_validator.Rd
man/valid_alleles.Rd
man/valid_contigs.Rd
man/valid_contigs_with_chr.Rd
man/valid_references.Rd
man/vin.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
tests/testthat.R
tests/testthat/helper-expects.R
tests/testthat/test-getRSID.R
tests/testthat/test-utils_basic.R
