get_2smr_results: Run Two-Sample MR on pre-processed data.

In richardslab/MRutils: Utility functions for preparing data for Two-Sample MR

Description

Run Two-Sample MR on pre-processed data.

Usage

get_2smr_results(preprocessed_snps)

Arguments

preprocessed_snps

a dataframe containing a collection of snps that have been prepared for use with two-sample MR. the expected columns are: rsid – the name of the SNP beta.exp – the exposure beta SE.exp – the exposure standard error EAF.exp – the exposure effect allele frequency EA.exp – the exposure effect allele NEA.exp – the exposure non-effect allele frequency P.exp – the exposure p-value beta.out – the outcome beta SE.out – the outcome standard error EAF.out – the outcome effect allele frequency EA.out – the outcome effect allele NEA.out – the outcome non-effect allele frequency P.out – the outcome p-value

Value

a list of many MR outcomes and plots

richardslab/MRutils documentation built on Dec. 22, 2021, 4 p.m.