prune_snps: Prunes a collection of SNPs provided in a dataframe. The...
In richardslab/MRutils: Utility functions for preparing data for Two-Sample MR
Description
Usage
Arguments
Value
Description
Prunes a collection of SNPs provided in a dataframe.
The method is as follows:
Usage
1
prune_snps(data_with_rsids, ld_pairs, r2_threshold = 0.05)
Arguments
data_with_rsids
an input dataframe that includes column rsid
ld_pairs
the result from calling get_LD_pairs matrix on the collection of rsids (and their contigs) in data_with_rsids
r2_threshold
the (r^2) threshold to use for considering two snps to be in LD
Value
a subset of the original dataframe, pruned according to some method....
richardslab/MRutils documentation built on Dec. 22, 2021, 4 p.m.
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Description Usage Arguments Value
Description
Prunes a collection of SNPs provided in a dataframe. The method is as follows:
Usage
1 | prune_snps(data_with_rsids, ld_pairs, r2_threshold = 0.05)
|
Arguments
data_with_rsids |
an input dataframe that includes column rsid |
ld_pairs |
the result from calling get_LD_pairs matrix on the collection of rsids (and their contigs) in data_with_rsids |
r2_threshold |
the (r^2) threshold to use for considering two snps to be in LD |
Value
a subset of the original dataframe, pruned according to some method....
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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