create_msa: Creata a multiple-sequence alignment
In richelbilderbeek/bbbq: The Bilderbeek Bianchi and Bogaart Question
create_msa R Documentation
Creata a multiple-sequence alignment
Description
Creata a multiple-sequence alignment
Usage
create_msa(protein_sequences, msa_method, msa_subst_matrix)
Arguments
protein_sequences
one or more protein sequences
msa_method
the method argument of msa.
Valid methods are ClustalW, ClustalOmega (preferred for proteins)
and Muscle
msa_subst_matrix
multiple sequence alignment substitution matrix,
the substitutionMatrix argument of msa.
For a protein alignment, relevant values are blosum,
pam and gonnet
Value
a MsaAAMultipleAlignment
richelbilderbeek/bbbq documentation built on July 27, 2023, 2:15 a.m.
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| create_msa | R Documentation |
Creata a multiple-sequence alignment
Description
Creata a multiple-sequence alignment
Usage
create_msa(protein_sequences, msa_method, msa_subst_matrix)
Arguments
protein_sequences |
one or more protein sequences |
msa_method |
the |
msa_subst_matrix |
multiple sequence alignment substitution matrix,
the |
Value
a MsaAAMultipleAlignment
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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