get_bergseng_et_al_2015_sup_1_epitope_sequences: HIERO Get the table of Supplementary Material 1 from Bergseng...

In richelbilderbeek/bbbq: The Bilderbeek Bianchi and Bogaart Question

HIERO Get the table of Supplementary Material 1 from Bergseng et al., 2015. Will download the file if needed.

Description

HIERO Get the table of Supplementary Material 1 from Bergseng et al., 2015. Will download the file if needed.

Usage

get_bergseng_et_al_2015_sup_1_epitope_sequences(
  url = bbbq::get_bergseng_et_al_2015_sup_1_url(),
  xlsx_filename = file.path(rappdirs::user_data_dir(appname = "bbbq"),
    "251_2014_819_MOESM3_ESM.xlsx"),
  verbose = FALSE
)

Arguments

url	the download URL, as returned by get_bergseng_et_al_2015_sup_1_url
xlsx_filename	the XLSX filename
verbose	set to TRUE for more output

Value

a tibble[tibble], with columns named cell_line, infected, epitope_sequence, epitope_length, copy_number, source_protein, gene, best_allele, best_allele_rank, best_allele_predscore, normalized_copyno

richelbilderbeek/bbbq documentation built on July 27, 2023, 2:15 a.m.