create_uniform_distr: Create a uniform distribution

In richelbilderbeek/beastscriptr: 'BEAUti' from R

Create a uniform distribution

Description

Create a uniform distribution

Usage

create_uniform_distr(id = NA, value = NA, lower = NA, upper = Inf)

Arguments

id	the distribution's ID
value	the initial value for the MCMC
lower	the lower bound, the lowest possible value
upper	an upper limit of the uniform distribution. If the upper limits needs to be infinity, set upper to Inf.

Value

a uniform distribution

Author(s)

Richèl J.C. Bilderbeek

See Also

the function create_distr shows an overview of all supported distributions

Examples

if (is_on_ci()) {

  uniform_distr <- create_uniform_distr()

  beast2_input_file <- get_beautier_tempfilename()
  create_beast2_input_file(
    input_filename = get_fasta_filename(),
    beast2_input_file,
    tree_prior = create_yule_tree_prior(
      birth_rate_distr = uniform_distr
    )
  )
  file.remove(beast2_input_file)

  remove_beautier_folder()
}

richelbilderbeek/beastscriptr documentation built on April 9, 2024, 2:28 p.m.