is_mrca_align_id_in_fasta: Determine if an MRCA prior's alignment IDs is present in the...

In richelbilderbeek/beastscriptr: 'BEAUti' from R

Determine if an MRCA prior's alignment IDs is present in the FASTA file

Description

Determine if an MRCA prior's alignment IDs is present in the FASTA file

Usage

is_mrca_align_id_in_fasta(mrca_prior, fasta_filename)

Arguments

mrca_prior	a Most Recent Common Ancestor prior, as returned by create_mrca_prior
fasta_filename	a FASTA filename. Use get_fasta_filename to obtain a testing FASTA filename. Note that BEAST2 also supports missing data, by using a dash (-) or question mark (?) as a sequence.

Value

TRUE if the MRCA prior's alignment IDs is present in the FASTA file. Returns FALSE otherwise

Author(s)

Richèl J.C. Bilderbeek

richelbilderbeek/beastscriptr documentation built on April 9, 2024, 2:28 p.m.