test_that("use", {
check_empty_beautier_folder()
inference_model <- init_inference_model(
input_filename = get_fasta_filename(),
inference_model = create_test_inference_model(
beauti_options = create_beauti_options_v2_4()
)
)
created <- rnd_phylo_to_xml_init(inference_model)
expected <- c(
"<init id=\"RandomTree.t:test_output_0\" spec=\"beast.evolution.tree.RandomTree\" estimate=\"false\" initial=\"@Tree.t:test_output_0\" taxa=\"@test_output_0\">", # nolint long line indeed
" <populationModel id=\"ConstantPopulation0.t:test_output_0\" spec=\"ConstantPopulation\">", # nolint long line indeed
" <parameter id=\"randomPopSize.t:test_output_0\" name=\"popSize\">1.0</parameter>", # nolint long line indeed
" </populationModel>",
"</init>"
)
expect_equal(created, expected)
})
test_that("use, 2.6", {
inference_model <- init_inference_model(
input_filename = get_fasta_filename(),
inference_model = create_test_inference_model(
beauti_options = create_beauti_options_v2_6()
)
)
created <- rnd_phylo_to_xml_init(inference_model)
expected <- c(
"<init id=\"RandomTree.t:test_output_0\" spec=\"beast.evolution.tree.RandomTree\" estimate=\"false\" initial=\"@Tree.t:test_output_0\" taxa=\"@test_output_0\">", # nolint long line indeed
" <populationModel id=\"ConstantPopulation0.t:test_output_0\" spec=\"ConstantPopulation\">", # nolint long line indeed
" <parameter id=\"randomPopSize.t:test_output_0\" spec=\"parameter.RealParameter\" name=\"popSize\">1.0</parameter>", # nolint long line indeed
" </populationModel>",
"</init>"
)
expect_equal(created, expected)
check_empty_beautier_folder()
})
test_that("abuse", {
check_empty_beautier_folder()
expect_error(
rnd_phylo_to_xml_init(ape::rcoal(3))
)
check_empty_beautier_folder()
})
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