Files in richelbilderbeek/becosys

Unified Interface To Phylogenetics Models Of Speciation

R/bco_bd_sim.R R/bco_mbd_sim.R R/bco_pbd_sim.R R/bd_sim.R R/becosys.R R/check_conditioned_on.R R/check_crown_age.R R/check_each_pbd_param_selected_once.R R/check_init_n_species.R R/check_mbd_params.R R/check_mbd_params_selector.R R/check_pbd_params.R R/check_pbd_params_selector.R R/check_pbd_sim_out.R R/check_stem_age.R R/create_bd_params.R R/create_mbd_params.R R/create_mbd_params_selector.R R/create_pbd_params.R R/create_pbd_params_selector.R R/default_params_doc.R R/get_bd_param_names.R R/get_mbd_param_names.R R/get_pbd_param_names.R R/is_bd_params.R R/is_mbd_params.R R/is_mbd_params_selector.R R/is_pbd_params.R R/is_pbd_params_selector.R R/mbd_calc_max_lik.R R/mbd_sim.R R/pbd_calc_max_lik.R R/pbd_expected_n_extant.R R/pbd_find_scenario.R R/pbd_get_exp_n_lineages_pb.R R/pbd_numspec_checked.R R/pbd_numspec_quantile_checked.R R/pbd_sim_checked.R README.md man/bco_bd_sim.Rd man/bco_mbd_sim.Rd man/bco_pbd_sim.Rd man/bd_sim.Rd man/check_conditioned_on.Rd man/check_crown_age.Rd man/check_each_pbd_param_selected_once.Rd man/check_init_n_species.Rd man/check_mbd_params.Rd man/check_mbd_params_selector.Rd man/check_pbd_params.Rd man/check_pbd_params_selector.Rd man/check_pbd_sim_out.Rd man/check_stem_age.Rd man/create_bd_params.Rd man/create_mbd_params.Rd man/create_mbd_params_selector.Rd man/create_pbd_params.Rd man/create_pbd_params_selector.Rd man/default_params_doc.Rd man/get_bd_param_names.Rd man/get_mbd_param_names.Rd man/get_pbd_param_names.Rd man/get_pbd_scenario_function.Rd man/is_bd_params.Rd man/is_mbd_params.Rd man/is_mbd_params_selector.Rd man/is_pbd_params.Rd man/is_pbd_params_selector.Rd man/mbd_calc_max_lik.Rd man/mbd_sim.Rd man/pbd_calc_max_lik.Rd man/pbd_expected_n_extant.Rd man/pbd_find_scenario.Rd man/pbd_get_exp_n_lineages_pb.Rd man/pbd_numspec_mean_checked.Rd man/pbd_numspec_median_checked.Rd man/pbd_numspec_quantile_checked.Rd man/pbd_sim_checked.Rd tests/testthat.R tests/testthat/test-bco_bd_sim.R tests/testthat/test-bco_mbd_sim.R tests/testthat/test-bco_pbd_sim.R tests/testthat/test-bco_sim.R tests/testthat/test-bd_sim.R tests/testthat/test-check_conditioned_on.R tests/testthat/test-check_crown_age.R tests/testthat/test-check_init_n_species.R tests/testthat/test-check_mbd_params.R tests/testthat/test-check_mbd_params_selector.R tests/testthat/test-check_pbd_params.R tests/testthat/test-check_pbd_params_selector.R tests/testthat/test-check_pbd_sim_out.R tests/testthat/test-check_stem_age.R tests/testthat/test-create_bd_params.R tests/testthat/test-create_mbd_params.R tests/testthat/test-create_mbd_params_selector.R tests/testthat/test-create_pbd_params.R tests/testthat/test-create_pbd_params_selector.R tests/testthat/test-get_bd_param_names.R tests/testthat/test-get_mbd_param_names.R tests/testthat/test-get_pbd_param_names.R tests/testthat/test-is_bd_params.R tests/testthat/test-is_mbd_params.R tests/testthat/test-is_mbd_params_selector.R tests/testthat/test-is_pbd_params.R tests/testthat/test-is_pbd_params_selector.R tests/testthat/test-mbd_calc_max_lik.R tests/testthat/test-mbd_sim.R tests/testthat/test-pbd_calc_max_lik.R tests/testthat/test-pbd_expected_n_extant.R tests/testthat/test-pbd_find_scenario.R tests/testthat/test-pbd_get_exp_n_lineages_pb.R tests/testthat/test-pbd_numspec_checked.R tests/testthat/test-pbd_numspec_quantile_checked.R tests/testthat/test-pbd_sim_checked.R vignettes/pbd_sampling.Rmd