pbd_find_scenario: Create an example scenario

In richelbilderbeek/becosys: Unified Interface To Phylogenetics Models Of Speciation

Description

Create an example scenario

Usage

pbd_find_scenario(
  scr,
  sirg,
  siri,
  scenario,
  erg = 0,
  eri = 0,
  crown_age = 1,
  min_n_species = 1,
  max_n_species = 10000,
  min_n_subspecies = 2,
  max_n_subspecies = 10000,
  rng_seed = 42
)

Arguments

scr	Speciation Completion Rate
sirg	Speciation Initiation Rate of Good Species
siri	Speciation Initiation Rate of Incipient Species
scenario	scenario to look for, can be 'equal' (branch length of youngest equals oldest equals random) 'expected', 'ylto' (youngest longer than oldest) 'rsty' (random shorter than youngest) 'rlto' (random longer than oldest) 'expsl' (expected, but also includes shortest and longest) 'yltosl' (ylto, but also includes shortest and longest) 'rstysl' (rsty, but also includes shortest and longest) 'rltosl' (rlto, but also includes shortest and longest) 'rsts' (random shorter than shortest) 'rltl' (random longer than longest) 'sltl' (shortest longer than longest)
erg	Extinction Rate of Good Species
eri	Extinction Rate of Incipient Species
crown_age	crown age of the phylogeny
min_n_species	minimal number of good species
max_n_species	maximal number of good species,
min_n_subspecies	minimal number of subspecies
max_n_subspecies	maximal number of subspecies
rng_seed	Random Number Generator seed

richelbilderbeek/becosys documentation built on Oct. 19, 2020, 9:20 a.m.