Man pages for richelbilderbeek/becosys
Unified Interface To Phylogenetics Models Of Speciation
| bco_bd_sim | Conformized name of bd_sim |
| bco_mbd_sim | Conformized name of mbd_sim |
| bco_pbd_sim | Higher-level interface to pbd_sim |
| bd_sim | Simulate a constant-rate birth-death process. |
| check_conditioned_on | Check if the conditioning is a proper descriptor |
| check_crown_age | Check if the crown age is valid |
| check_each_pbd_param_selected_once | Check if the two 'pbd_params_selector's together select each... |
| check_init_n_species | Check if the initial number of species equals one or two |
| check_mbd_params | Check a MBD parameters set. |
| check_mbd_params_selector | Check if the supplied object in an MBD parameter selector. |
| check_pbd_params | Check a PBD parameters set. |
| check_pbd_params_selector | Check if the input is a valid PBD parameter selector. |
| check_pbd_sim_out | Check the result of a PBD simulation. |
| check_stem_age | Check if the stem age is valid |
| create_bd_params | Create the BD parameters |
| create_mbd_params | Create the MBD parameters |
| create_mbd_params_selector | Create an MBD parameter selector |
| create_pbd_params | Create the PBD parameters |
| create_pbd_params_selector | Create a PBD parameter selector |
| default_params_doc | This function does nothing. It is intended to inherit is... |
| get_bd_param_names | Get the names of the parameters used in the BD model |
| get_mbd_param_names | Get the names of the parameters used in the MBD model |
| get_pbd_param_names | Get the names of the parameters used in the PBD model |
| get_pbd_scenario_function | Gets a function to determine if a scenario is true |
| is_bd_params | Is object 'x' an BD parameter set, as can be created by... |
| is_mbd_params | Is object 'x' an MBD parameter set, as can be created by... |
| is_mbd_params_selector | Determine if the supplied object in an MBD parameter... |
| is_pbd_params | Is object 'x' an PBD parameter set, as can be created by... |
| is_pbd_params_selector | Determine if the supplied object in an PBD parameter... |
| mbd_calc_max_lik | Do an MBD maximum likelihood estimate. |
| mbd_sim | More intuitive interface of mbd_sim |
| pbd_calc_max_lik | Do an PBD maximum likelihood estimate. |
| pbd_expected_n_extant | Get the median of the number of extant species from a PBD... |
| pbd_find_scenario | Create an example scenario |
| pbd_get_exp_n_lineages_pb | Get the expected number of good and incipient lineages from a... |
| pbd_numspec_mean_checked | Calcates the mean number of species under protracted... |
| pbd_numspec_median_checked | Calcates the median number of species under protracted... |
| pbd_numspec_quantile_checked | Checked version of 'pbd_numspec_quantile' |
| pbd_sim_checked | Checked and safer version of PBD::pbd_sim |
