Files in richelbilderbeek/bianchi_et_al_2017
Bianchi Et Al Two Thousand Seventeen
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/make.yaml
.gitignore
DESCRIPTION
LICENSE
Makefile
NAMESPACE
R/data.R
R/download_proteome.R
R/download_schellens_et_al_2015_sup_1.R
R/download_tmhmm_topology.R
R/get_proteome.R
R/get_proteome_url.R
R/get_schellens_et_al_2015_sup_1.R
R/get_tmhmm_topology.R
README.md
bianchi_et_2018_fig_3_published.png
bianchi_et_2018_fig_3_raw.png
bianchietal2017.Rproj
binding-predictions/.gitignore
calculate-overlap-controls.R
calculate-overlap.R
correlate-to-hydrophobicity.R
data/README.md
data/TMH-Bcell-elution.txt
data/journal.pone.0136417.s005-1.xlsx
data/kyte.doolittle.scale.Rdata
data/non-TMH-Bcell-elution.txt
get-protein-lengths.R
hydrophobe-controls.R
hydrophobicity-distribution-elution-data.R
hydrophobicity-distribution.R
man/download_proteome.Rd
man/download_schellens_et_al_2015_sup_1.Rd
man/download_tmhmm_topology.Rd
man/figures/Codecov.png
man/figures/GitHubActions.png
man/get_proteome.Rd
man/get_proteome_url.Rd
man/get_schellens_et_al_2015_sup_1.Rd
man/get_tmhmm_topology.Rd
pics/AppVeyor.png
pics/Codecov.png
pics/TravisCI.png
pics/makefile.png
plots/.gitignore
plots/figure-1-a.png
plots/figure-1-a.tiff
plots/figure-1-a_bw.png
plots/figure-1-a_bw.tiff
predict-binders.R
prepare-data.R
proteome/.gitignore
proteome_2017/README.md
proteome_2017/UP000005640_9606.fasta.gz
tests/testthat.R
tests/testthat/test-download_proteome.R
tests/testthat/test-download_schellens_et_al_2015_sup_1.R
tests/testthat/test-download_tmhmm_topology.R
tests/testthat/test-get_proteome.R
tests/testthat/test-get_proteome_url.R
tests/testthat/test-get_schellens_et_al_2015_sup_1.R
tests/testthat/test-get_tmhmm_topology.R
tmh-predictions/HLA_predictions.xlsx
tmh-predictions/trans-membrane-analysis-shortened.txt
tools.R
work/.gitignore
