README.md

In richelbilderbeek/cobaltr: Interface Io COBALT

cobaltr

Branch |GitHub Actions | ---------|-----------------------------------------------------------------------------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------- master | | develop||

Interface to COBALT, the Constraint-based Multiple Alignment Tool.

Installation

remotes::install_github("richelbilderbeek/cobaltr")

Install COBALT

After installing cobaltr, install COBALT on your local computer:

cobaltr::install_cobalt()

• :warning: This is a +900 Mb download, this will take some time

This only needs to be done once.

Example

library(cobaltr)

# Get the path to an example FASTA file
fasta_filename <- system.file("extdata", "example.fasta", package = "cobaltr")

# Get the multiple sequence alignment
run_cobalt(fasta_filename)

richelbilderbeek/cobaltr documentation built on March 29, 2024, 7:46 a.m.