run_cobalt: Run COBALT

View source: R/run_cobalt.R

run_cobaltR Documentation

Run COBALT

Description

Will stop if COBALT has an error.

Usage

run_cobalt(
  fasta_filename,
  cobalt_options = create_cobalt_options(),
  cobalt_folder = get_default_cobalt_folder()
)

Arguments

fasta_filename

name of a FASTA file

cobalt_options

a set of COBALT options, as can be created by create_cobalt_options

cobalt_folder

the folder where COBALT is installed in. Use get_default_cobalt_folder to get the default COBALT folder

Value

text of a FASTA file


richelbilderbeek/cobaltr documentation built on March 29, 2024, 7:46 a.m.