run_sim: Run the simulation

In richelbilderbeek/huisweis: Reproduce Huisman And Weissing 1999

Description

Run the simulation

Usage

run_sim(initial_species_densities, initial_resource_densities, dt, t_max,
  max_growth_rates, mortality_rates, hsrs, srcs, supply_rates, turnover_rate)

Arguments

initial_species_densities	the species densities at time zero
initial_resource_densities	the resource densities at time zero
dt	delta timestep
t_max	simulation will run in steps of dt until (not inclusive) this time point is reached
max_growth_rates	max growth rate of all species
mortality_rates	mortality rates of all species
hsrs	a matrix of half-saturation constants of species (rows) on resources (columns). Can be created by create_hsrs
srcs	a matrix of species' resource content of species (rows) of resources (columns). Can be created by create_srcs
supply_rates	the rate at which resources are pumped into the system
turnover_rate	the turnover rate of the whole system

Value

a data frame with the species densities and resource concentrations (as columns) in time (as rows)

Author(s)

Richel J.C. Bilderbeek

richelbilderbeek/huisweis documentation built on May 9, 2019, 7:36 a.m.