Description Usage Arguments Author(s)
View source: R/lum_create_cmd.R
Create the beautier
command from the user interface
1 2 3 4 5 6 7 8 9 10 11 | lum_create_cmd(
input_filename = "test.fas",
output_filename = "beast2.xml",
gamma_site_model = beautier::create_gamma_site_model(),
subst_model = "JC69",
clock_model = "Strict Clock",
tree_prior = "Yule Model",
chain_length = 1e+07,
store_every = -1,
as_file = FALSE
)
|
input_filename |
the name of the FASTA filename |
output_filename |
the name of the to-be-created BEAST2 file |
gamma_site_model |
a gamma_site_model, as created by create_gamma_site_model |
subst_model |
name of the substitution model |
clock_model |
the clock model, as text |
tree_prior |
name of the tree prior |
chain_length |
MCMC chain length |
store_every |
MCMC store interval |
as_file |
if TRUE, show |
Richèl J.C. Bilderbeek
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.