Files in richelbilderbeek/mcbette

Model Comparison Using 'babette'

.Rbuildignore

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/custom.md .github/ISSUE_TEMPLATE/feature_request.md .github/pull_request_template.md

.github/workflows/R-CMD-check.yaml

.github/workflows/check_bash_style.yaml

.github/workflows/check_links.yaml

.gitignore

CONTRIBUTING.md

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/calc_weights.R R/can_run_mcbette.R R/check_beast2_ns_pkg.R R/check_marg_liks.R R/check_mcbette_state.R R/default_params_doc.R R/est_marg_lik.R R/est_marg_liks.R R/get_mcbette_state.R R/get_test_marg_liks.R R/interpret_bayes_factor.R R/interpret_marg_lik_estimates.R R/is_marg_liks.R R/mcbette-package.R R/mcbette_report.R R/mcbette_self_test.R R/plot_marg_liks.R R/set_mcbette_state.R README.Rmd README.md

codemeta.json

doc/demo.R doc/demo.Rmd

doc/demo.html

inst/CITATION

inst/WORDLIST

inst/extdata/10_1000.fas

inst/extdata/160_1000.fas

inst/extdata/20_1000.fas

inst/extdata/30_1000.fas

inst/extdata/320_1000.fas

inst/extdata/40_1000.fas

inst/extdata/50_1000.fas

inst/extdata/60_1000.fas

inst/extdata/70_1000.fas

inst/extdata/80_1000.fas

inst/extdata/primates.fas

inst/extdata/simple.fas

man/calc_weights.Rd man/can_run_mcbette.Rd man/check_beast2_ns_pkg.Rd man/check_marg_liks.Rd man/check_mcbette_state.Rd man/default_params_doc.Rd man/est_marg_lik.Rd man/est_marg_liks.Rd

man/figures/AppVeyor.png

man/figures/Bnilssonlmacbeth.jpg

man/figures/Codecov.png

man/figures/GitHubActions.png

man/figures/README-example_alignment-1.png

man/figures/README-plot_marg_liks-1.png

man/figures/README-unnamed-chunk-2-1.png

man/figures/README.md

man/figures/alignment.png

man/figures/alignment_joss.fasta

man/figures/alignment_joss.png

man/figures/alignment_primates_joss.fasta

man/figures/alignment_primates_joss.png

man/figures/arrow.png

man/figures/combine_figs

man/figures/combined.png

man/figures/crown_PNG15.png

man/figures/marg_liks_joss.md man/figures/marg_liks_primates_joss.md

man/figures/mcbette_logo.png

man/figures/mcbette_logo_50.png

man/figures/phylogeny_joss.png

man/figures/posterior_joss_1.png

man/figures/posterior_joss_2.png

man/figures/posterior_joss_3.png

man/figures/posterior_joss_4.png

man/figures/posterior_primates_consensus_joss.png

man/figures/posterior_primates_joss_1.png

man/figures/posterior_primates_joss_2.png

man/figures/posterior_primates_joss_3.png

man/figures/posterior_primates_joss_4.png

man/figures/r_logo.png

man/get_mcbette_state.Rd man/get_test_marg_liks.Rd man/interpret_bayes_factor.Rd man/interpret_marg_lik_estimates.Rd man/is_marg_liks.Rd man/mcbette-package.Rd man/mcbette_report.Rd man/mcbette_self_test.Rd man/plot_marg_liks.Rd man/set_mcbette_state.Rd

mcbette.Rproj

mlc_config.json

paper.bib

paper.md

scripts/.gitignore

scripts/build_cran.sh

scripts/build_readme_md.sh

scripts/install_beast2_and_ns.sh

scripts/install_mcbette_deps

scripts/install_mcbette_develop.R scripts/issue_12_run_on_peregrine.R scripts/issue_25_estimate_primates.R scripts/joss_create_figs.R scripts/joss_create_figs_primates.R

scripts/primates.posterior.log

scripts/primates.posterior.trees

scripts/run.R

scripts/run_r_script

scripts/uninstall_beast2_and_ns.sh

tests/testthat.R

tests/testthat/.gitignore

tests/testthat/test-calc_weights.R tests/testthat/test-can_run_mcbette.R tests/testthat/test-check_marg_liks.R tests/testthat/test-check_mcbette_state.R tests/testthat/test-est_marg_lik.R tests/testthat/test-est_marg_liks.R tests/testthat/test-get_mcbette_state.R tests/testthat/test-get_test_marg_liks.R tests/testthat/test-interpret_bayes_factor.R tests/testthat/test-interpret_marg_lik_estimates.R tests/testthat/test-is_marg_liks.R tests/testthat/test-mcbette_report.R tests/testthat/test-plot_marg_liks.R tests/testthat/test-set_mcbette_state.R

vignettes/.gitignore

vignettes/demo.Rmd

vignettes/mcbette_logo.png

richelbilderbeek/mcbette documentation built on Oct. 1, 2023, 7:21 a.m.