Files in richelbilderbeek/mhcnuggetsr

Call MHCnuggets

.github/CODE_OF_CONDUCT.md .github/CONTRIBUTING.md .github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/custom.md .github/ISSUE_TEMPLATE/feature_request.md .github/SUPPORT.md CODE_OF_CONDUCT.md CONTRIBUTING.md NEWS.md R/are_mhcnuggets_names.R R/check_ba_models.R R/check_file_exists.R R/check_mhc.R R/check_mhc_class.R R/check_mhcnuggets_installation.R R/check_mhcnuggets_options.R R/check_mhcnuggets_url.R R/check_mhcnuggetsr_folder.R R/check_verbose.R R/create_mhcnuggets_options.R R/create_temp_peptides_path.R R/create_test_mhcnuggets_options.R R/default_params_doc.R R/downgrade_pip.R R/get_default_mhcnuggets_folder.R R/get_default_mhcnuggetsr_folder.R R/get_default_orm_folder_name.R R/get_example_filename.R R/get_example_filenames.R R/get_mhc_1_haplotypes.R R/get_mhc_2_haplotypes.R R/get_mhcnuggets_url.R R/get_mhcnuggets_version.R R/get_pip_version.R R/get_python_package_versions.R R/get_trained_mhc_1_haplotypes.R R/get_trained_mhc_2_haplotypes.R R/install_mhcnuggets.R R/install_pip.R R/is_mhcnuggets_installed.R R/is_mhcnuggets_name.R R/is_mhcnuggets_options.R R/is_on_ci.R R/is_pip_installed.R R/mhcnuggets_options_to_text.R R/mhcnuggetsr.R R/mhcnuggetsr_report.R R/mhcnuggetsr_self_test.R R/predict_ic50.R R/predict_ic50_from_file.R R/predict_ic50s.R R/set_is_mhcnuggets_installed.R R/set_pip_version.R R/to_mhcnuggets_name.R R/to_mhcnuggets_names.R R/uninstall_mhcnuggets.R R/uninstall_pip.R R/upgrade_pip.R README.Rmd README.md man/are_mhcnuggets_names.Rd man/check_ba_models.Rd man/check_file_exists.Rd man/check_mhc.Rd man/check_mhc_class.Rd man/check_mhcnuggets_installation.Rd man/check_mhcnuggets_options.Rd man/check_mhcnuggets_options_names.Rd man/check_mhcnuggets_url.Rd man/check_mhcnuggetsr_folder.Rd man/check_verbose.Rd man/create_mhcnuggets_options.Rd man/create_temp_peptides_path.Rd man/create_test_mhcnuggets_options.Rd man/default_params_doc.Rd man/downgrade_pip.Rd man/get_default_mhcnuggets_folder.Rd man/get_default_mhcnuggetsr_folder.Rd man/get_default_orm_folder_name.Rd man/get_example_filename.Rd man/get_example_filenames.Rd man/get_mhc_1_haplotypes.Rd man/get_mhc_2_haplotypes.Rd man/get_mhcnuggets_url.Rd man/get_mhcnuggets_version.Rd man/get_pip_version.Rd man/get_python_package_versions.Rd man/get_trained_mhc_1_haplotypes.Rd man/get_trained_mhc_2_haplotypes.Rd man/install_mhcnuggets.Rd man/install_pip.Rd man/is_mhcnuggets_installed.Rd man/is_mhcnuggets_name.Rd man/is_mhcnuggets_options.Rd man/is_on_appveyor.Rd man/is_on_ci.Rd man/is_on_travis.Rd man/is_pip_installed.Rd man/mhcnuggets_options_to_text.Rd man/mhcnuggetsr.Rd man/mhcnuggetsr_report.Rd man/mhcnuggetsr_self_test.Rd man/predict_ic50.Rd man/predict_ic50_from_file.Rd man/predict_ic50s.Rd man/set_is_mhcnuggets_installed.Rd man/set_pip_version.Rd man/to_mhcnuggets_name.Rd man/to_mhcnuggets_names.Rd man/uninstall_mhcnuggets.Rd man/uninstall_pip.Rd man/upgrade_pip.Rd scripts/demo_mhcnuggetsr.R tests/testthat.R tests/testthat/test-are_mhcnuggets_names.R tests/testthat/test-check_ba_models.R tests/testthat/test-check_file_exists.R tests/testthat/test-check_mhc.R tests/testthat/test-check_mhc_class.R tests/testthat/test-check_mhcnuggets_installation.R tests/testthat/test-check_mhcnuggets_installed.R tests/testthat/test-check_mhcnuggets_options.R tests/testthat/test-check_mhcnuggets_url.R tests/testthat/test-check_mhcnuggetsr_folder.R tests/testthat/test-check_verbose.R tests/testthat/test-create_mhcnuggets_options.R tests/testthat/test-create_temp_peptides_path.R tests/testthat/test-create_test_mhcnuggets_options.R tests/testthat/test-downgrade_pip.R tests/testthat/test-get_default_mhcnuggetsr_folder.R tests/testthat/test-get_default_orm_folder_name.R tests/testthat/test-get_example_filename.R tests/testthat/test-get_example_filenames.R tests/testthat/test-get_mhc_1_haplotypes.R tests/testthat/test-get_mhc_2_haplotypes.R tests/testthat/test-get_mhcnuggets_version.R tests/testthat/test-get_pip_version.R tests/testthat/test-get_python_package_versions.R tests/testthat/test-get_trained_mhc_1_haplotypes.R tests/testthat/test-get_trained_mhc_2_haplotypes.R tests/testthat/test-install_mhcnuggets.R tests/testthat/test-install_pip.R tests/testthat/test-is_mhcnuggets_installed.R tests/testthat/test-is_mhcnuggets_name.R tests/testthat/test-is_mhcnuggets_options.R tests/testthat/test-is_pip_installed.R tests/testthat/test-mhcnuggets_options_to_text.R tests/testthat/test-mhcnuggetsr_report.R tests/testthat/test-mhcnuggetsr_self_test.R tests/testthat/test-predict_ic50.R tests/testthat/test-predict_ic50_from_file.R tests/testthat/test-predict_ic50s.R tests/testthat/test-set_is_mhcnuggets_installed.R tests/testthat/test-set_pip_version.R tests/testthat/test-to_mhcnuggets_name.R tests/testthat/test-to_mhcnuggets_names.R tests/testthat/test-uninstall_mhcnuggets.R tests/testthat/test-uninstall_pip.R tests/testthat/test-upgrade_pip.R vignettes/demo.Rmd