get_mhc_1_haplotypes: Get all the MHC-I haplotypes

In richelbilderbeek/mhcnuggetsr: Call MHCnuggets

Get all the MHC-I haplotypes

Description

Get all the MHC-I haplotypes that MHCnuggets has been trained upon.

Usage

get_mhc_1_haplotypes(
  mhcnuggetsr_folder = get_default_mhcnuggets_folder(),
  ormr_folder_name = get_default_orm_folder_name()
)

Arguments

mhcnuggetsr_folder	folder where mhcnuggetsr stores its temporary files. Use get_default_mhcnuggetsr_folder for its default value.
ormr_folder_name	folder used by the ormr package to install Python packages to. Use python3 to install Python packages via pip. Default value is python3

Value

a character vector with haplotype names in MHCnuggets format

Author(s)

Richèl J.C. Bilderbeek

Examples

if (is_mhcnuggets_installed()) {
  get_mhc_1_haplotypes()
}

richelbilderbeek/mhcnuggetsr documentation built on Nov. 9, 2023, 10 p.m.