mhcnuggetsr_self_test: Self-test the package

In richelbilderbeek/mhcnuggetsr: Call MHCnuggets

Self-test the package

Description

Self-test the package

Usage

mhcnuggetsr_self_test(
  mhcnuggets_options = create_test_mhcnuggets_options(),
  peptides_path = create_temp_peptides_path(),
  mhcnuggets_output_filename = mhcnuggetsr::create_temp_peptides_path(fileext = ".csv"),
  verbose = FALSE
)

Arguments

mhcnuggets_options	options to run MHCnuggets with, as can be created by create_mhcnuggets_options.
peptides_path	the path to the peptides
mhcnuggets_output_filename	name of a temporary file where MHCnuggets writes its output to
verbose	set to TRUE for more debug information

Author(s)

Richèl J.C. Bilderbeek

Examples

if (is_mhcnuggets_installed()) {
  mhcnuggetsr_self_test()
}

richelbilderbeek/mhcnuggetsr documentation built on Nov. 9, 2023, 10 p.m.