Man pages for richelbilderbeek/mhcnuggetsr
Call MHCnuggets
| are_mhcnuggets_names | Are these MHCnuggets names? |
| check_ba_models | Check the 'ba_models' |
| check_file_exists | Check if a file exists. |
| check_mhc | Check if 'mhc' is a valud MHCnuggets name |
| check_mhc_class | Check the MHC class. |
| check_mhcnuggets_installation | Check if MHCnuggets is installed. |
| check_mhcnuggets_options | Check the MHCnuggets options. |
| check_mhcnuggets_options_names | Check the names of the elements in an 'mhcnuggets_options'... |
| check_mhcnuggetsr_folder | Check the 'mhcnuggetsr_folder' |
| check_mhcnuggets_url | Check the 'mhcnuggets_url' |
| check_verbose | Check the 'verbose' |
| create_mhcnuggets_options | Create a set of MHCnuggets options. |
| create_temp_peptides_path | Create a path to a non-existing temporary file |
| create_test_mhcnuggets_options | Create testing options for MHCnuggets |
| default_params_doc | This function does nothing. It is intended to inherit the... |
| downgrade_pip | Downgrade pip. |
| get_default_mhcnuggets_folder | Get the path to the folder where this package installs... |
| get_default_mhcnuggetsr_folder | Get the path to the folder where this package installs the... |
| get_default_orm_folder_name | Get the default folder for ormr. |
| get_example_filename | Get the full path to an MHCnuggets example file |
| get_example_filenames | Get the full path to all MHCnuggets example files |
| get_mhc_1_haplotypes | Get all the MHC-I haplotypes |
| get_mhc_2_haplotypes | Get all the MHC-II haplotypes |
| get_mhcnuggets_url | Get the URL of the MHCnuggets source code |
| get_mhcnuggets_version | Get the MHCnuggets version |
| get_pip_version | Get the version of pip |
| get_python_package_versions | Get the version of all Python packages |
| get_trained_mhc_1_haplotypes | Get all the MHC-I haplotypes that have been trained on a... |
| get_trained_mhc_2_haplotypes | Get all the MHC-II haplotypes that have been trained on a... |
| install_mhcnuggets | Install the 'MHCnuggets' 'Python' package. |
| install_pip | Install pip. |
| is_mhcnuggets_installed | Check if MHCnuggets is installed |
| is_mhcnuggets_name | Is this an MHCnuggets name? |
| is_mhcnuggets_options | Is this a 'mhcnuggets_options'? |
| is_on_appveyor | Determines if the environment is AppVeyor |
| is_on_ci | Determines if the environment is a continuous integration... |
| is_on_travis | Determines if the environment is Travis CI |
| is_pip_installed | Determine if pip is installed |
| mhcnuggets_options_to_text | Convert a 'mhcnuggets_options' to text |
| mhcnuggetsr | mhcnuggetsr: estimate the topoplogy of membrane proteins |
| mhcnuggetsr_report | Create a mhcnuggetsr report, to be used when reporting bugs |
| mhcnuggetsr_self_test | Self-test the package |
| predict_ic50 | Predict the IC50 for peptides. |
| predict_ic50_from_file | Predict the half maximal inhibitory concentration (aka IC50)... |
| predict_ic50s | Predict the half maximal inhibitory concentrations (aka... |
| set_is_mhcnuggets_installed | Set the MHCnuggets installation state to the desired one |
| set_pip_version | Set the version of pip. |
| to_mhcnuggets_name | Convert a standard haplotype name to the MHCnuggets name |
| to_mhcnuggets_names | Convert one or more standard haplotype name to the MHCnuggets... |
| uninstall_mhcnuggets | Uninstall the MHCnuggets Python package. |
| uninstall_pip | Install pip. |
| upgrade_pip | Uograde pip. |
