Man pages for richelbilderbeek/nLTT
Calculate the NLTT Statistic

abc_smc_nlttA function to perform Approximate Bayesian Computation within...
exampleTreesexample trees to test the functionality of the package
get_average_nltt_matrixGet the average nLTT from a collection of phylogenies
get_branching_timesCollect the branching times from the stem age
get_n_lineagesCollect the number of lineages from the stem age
get_nltt_valuesCollects the nLTT values of all phylogenies in the...
get_norm_brtsCollect the normalized branching times from the stem age
get_norm_nCollect the normalized number of lineages from the stem age
get_phylogeny_nltt_matrixExtract the nLTT matrix from a phylogeny
MCMC_nLTTCode to perform Metropolis-Hastings MCMC for a...
nltt_diffCalculates the exact difference between the lineage through...
nltt_diff_exactCalculates the exact, difference between the lineage through...
nltt_diff_exact_brtsCalculates the exact difference between the nLTT curves of...
nltt_diff_exact_norm_brtsCalculates the exact difference between the nLTT curves of...
nLTT-internalInternal nLTT functions
nltt_linesNormalized version of the ape function ltt.lines.
nLTT-packagePackage providing functions to visualize the normalized...
nltt_plotNormalized version of the ape function ltt.plot
nltts_plotGet the average nLTT from a collection of phylogenies
nLTTstatCalculate the difference between two normalized...
nLTTstat_exactCalculate the exact difference between two normalized...
stretch_nltt_matrixStretch matrix 'm' with a timestep resolution of 'dt'.
richelbilderbeek/nLTT documentation built on Nov. 23, 2017, 11:07 a.m.