Calculate the NLTT Statistic

abc_smc_nltt | A function to perform Approximate Bayesian Computation within... |

exampleTrees | example trees to test the functionality of the package |

get_average_nltt_matrix | Get the average nLTT from a collection of phylogenies |

get_branching_times | Collect the branching times from the stem age |

get_n_lineages | Collect the number of lineages from the stem age |

get_nltt_values | Collects the nLTT values of all phylogenies in the... |

get_norm_brts | Collect the normalized branching times from the stem age |

get_norm_n | Collect the normalized number of lineages from the stem age |

get_phylogeny_nltt_matrix | Extract the nLTT matrix from a phylogeny |

MCMC_nLTT | Code to perform Metropolis-Hastings MCMC for a... |

nltt_diff | Calculates the exact difference between the lineage through... |

nltt_diff_exact | Calculates the exact, difference between the lineage through... |

nltt_diff_exact_brts | Calculates the exact difference between the nLTT curves of... |

nltt_diff_exact_norm_brts | Calculates the exact difference between the nLTT curves of... |

nLTT-internal | Internal nLTT functions |

nltt_lines | Normalized version of the ape function ltt.lines. |

nLTT-package | Package providing functions to visualize the normalized... |

nltt_plot | Normalized version of the ape function ltt.plot |

nltts_diff | Calculates the nLTT statistic between each phylogeny in a... |

nltts_plot | Get the average nLTT from a collection of phylogenies |

nLTTstat | Calculate the difference between two normalized... |

nLTTstat_exact | Calculate the exact difference between two normalized... |

stretch_nltt_matrix | Stretch matrix 'm' with a timestep resolution of 'dt'. |

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