Files in richelbilderbeek/nLTT
Calculate the NLTT Statistic

.Rbuildignore
.gitignore
.travis.yml
CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
R/ABC_SMC.R R/get_average_nltt_matrix.R R/get_branching_times.R R/get_n_lineages.R R/get_nltt_values.R R/get_norm_brts.R R/get_norm_n.R R/get_phylogeny_nltt_matrix.R R/nLTTDiff.R R/nltts_plot.R R/plot_nLTT.R R/stretch_nltt_matrix.R README.md
appveyor.yml
checkout_all_branches
clean_package.sh
clean_vignettes.sh
code_of_conduct.md
data/exampleTrees.rda
inst/doc/trees_with_root_edge.R inst/doc/trees_with_root_edge.Rmd
inst/doc/trees_with_root_edge.html
inst/doc/vignette_get_nltt_values.R inst/doc/vignette_get_nltt_values.Rmd
inst/doc/vignette_get_nltt_values.html
inst/doc/vignette_nltts_plot.R inst/doc/vignette_nltts_plot.Rmd
inst/doc/vignette_nltts_plot.html
inst/doc/vignette_stretch_nltt_matrix.R inst/doc/vignette_stretch_nltt_matrix.Rmd
inst/doc/vignette_stretch_nltt_matrix.html
inst/doc/walkthrough.R inst/doc/walkthrough.Rmd
inst/doc/walkthrough.html
inst/extdata/issue_38.RDa
man/MCMC_nLTT.Rd man/abc_smc_nltt.Rd man/exampleTrees.Rd man/get_average_nltt_matrix.Rd man/get_branching_times.Rd man/get_n_lineages.Rd man/get_nltt_values.Rd man/get_norm_brts.Rd man/get_norm_n.Rd man/get_phylogeny_nltt_matrix.Rd man/nLTT-internal.Rd man/nLTT-package.Rd man/nLTTstat.Rd man/nLTTstat_exact.Rd man/nltt_diff.Rd man/nltt_diff_exact.Rd man/nltt_diff_exact_brts.Rd man/nltt_diff_exact_norm_brts.Rd man/nltt_lines.Rd man/nltt_plot.Rd man/nltts_diff.Rd man/nltts_plot.Rd man/stretch_nltt_matrix.Rd
nLTT.Rproj
pics/AppVeyor.png
pics/Codecov.png
pics/TravisCI.png
tests/testthat.R tests/testthat/test-abc_smc_nltt.R tests/testthat/test-calculate_weight.R tests/testthat/test-get_average_nltt.R tests/testthat/test-get_average_nltt_matrix.R tests/testthat/test-get_branching_times.R tests/testthat/test-get_n_lineages.R tests/testthat/test-get_nltt_values.R tests/testthat/test-get_phylogeny_nltt_matrix.R tests/testthat/test-mcmc_nltt.R tests/testthat/test-nLTTstat.R tests/testthat/test-nLTTstat_exact.R tests/testthat/test-nltt_diff.R tests/testthat/test-nltt_diff_exact.R tests/testthat/test-nltt_diff_exact_norm_brts.R tests/testthat/test-nltt_plot.R tests/testthat/test-nltts_diff.R tests/testthat/test-nltts_plot.R tests/testthat/test-stretch_nltt_matrix.R vignettes/get_nltt_values.R vignettes/get_nltt_values.Rmd
vignettes/get_nltt_values.html
vignettes/nltt_diff.R vignettes/nltt_diff.Rmd
vignettes/nltt_diff.html
vignettes/nltts_plot.R vignettes/nltts_plot.Rmd
vignettes/nltts_plot.html
vignettes/stretch_nltt_matrix.R vignettes/stretch_nltt_matrix.Rmd
vignettes/stretch_nltt_matrix.html
vignettes/trees_with_root_edge.R vignettes/trees_with_root_edge.Rmd
vignettes/trees_with_root_edge.html
vignettes/walkthrough.R vignettes/walkthrough.Rmd
vignettes/walkthrough.html
richelbilderbeek/nLTT documentation built on April 29, 2018, 1:10 p.m.