Files in richelbilderbeek/nLTT
Calculate the NLTT Statistic
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/simple.yml
.github/workflows/test-coverage.yaml
.gitignore
.lintr
.travis.yml
CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/ABC_SMC.R
R/check_phylogenies.R
R/check_step_type.R
R/check_time_unit.R
R/default_params_doc.R
R/get_average_nltt_matrix.R
R/get_branching_times.R
R/get_n_lineages.R
R/get_nltt_values.R
R/get_norm_brts.R
R/get_norm_n.R
R/get_phylogeny_nltt_matrix.R
R/nLTTDiff.R
R/nltt_diff_exact_extinct.R
R/nltts_plot.R
R/plot_nLTT.R
R/stretch_nltt_matrix.R
README.md
appveyor.yml
code_of_conduct.md
data/exampleTrees.rda
inst/extdata/issue_38.RDa
man/abc_smc_nltt.Rd
man/check_input_event_times.Rd
man/check_phylogenies.Rd
man/check_step_type.Rd
man/check_time_unit.Rd
man/default_params_doc.Rd
man/exampleTrees.Rd
man/get_average_nltt_matrix.Rd
man/get_branching_times.Rd
man/get_n_lineages.Rd
man/get_nltt_values.Rd
man/get_norm_brts.Rd
man/get_norm_n.Rd
man/get_phylogeny_nltt_matrix.Rd
man/mcmc_nltt.Rd
man/nLTT-internal.Rd
man/nLTT-package.Rd
man/nLTTstat.Rd
man/nLTTstat_exact.Rd
man/nltt_diff.Rd
man/nltt_diff_exact.Rd
man/nltt_diff_exact_brts.Rd
man/nltt_diff_exact_calc_extinct.Rd
man/nltt_diff_exact_extinct.Rd
man/nltt_diff_exact_norm_brts.Rd
man/nltt_lines.Rd
man/nltt_plot.Rd
man/nltts_diff.Rd
man/nltts_plot.Rd
man/stretch_nltt_matrix.Rd
nLTT.Rproj
pics/Codecov.png
pics/github_actions_logo.png
pics/nLTT_sticker.png
scripts/checkout_all_branches
scripts/clean_package.sh
scripts/clean_vignettes.sh
tests/testthat.R
tests/testthat/test-abc_smc_nltt.R
tests/testthat/test-calculate_weight.R
tests/testthat/test-check_phylogenies.R
tests/testthat/test-check_step_type.R
tests/testthat/test-check_time_unit.R
tests/testthat/test-get_average_nltt.R
tests/testthat/test-get_average_nltt_matrix.R
tests/testthat/test-get_branching_times.R
tests/testthat/test-get_n_lineages.R
tests/testthat/test-get_nltt_values.R
tests/testthat/test-get_norm_brts.R
tests/testthat/test-get_norm_n.R
tests/testthat/test-get_phylogeny_nltt_matrix.R
tests/testthat/test-log_transform.R
tests/testthat/test-mcmc_nltt.R
tests/testthat/test-nLTTDiff.R
tests/testthat/test-nLTTstat.R
tests/testthat/test-nLTTstat_exact.R
tests/testthat/test-nltt_diff.R
tests/testthat/test-nltt_diff_exact.R
tests/testthat/test-nltt_diff_exact_brts.R
tests/testthat/test-nltt_diff_exact_extinct.R
tests/testthat/test-nltt_diff_exact_norm_brts.R
tests/testthat/test-nltt_plot.R
tests/testthat/test-nltts_diff.R
tests/testthat/test-nltts_plot.R
tests/testthat/test-stretch_nltt_matrix.R
tests/testthat/test-style.R
vignettes/.gitignore
vignettes/get_nltt_values.Rmd
vignettes/nltt_diff.Rmd
vignettes/nltts_plot.Rmd
vignettes/stretch_nltt_matrix.Rmd
vignettes/trees_with_root_edge.Rmd
vignettes/walkthrough.Rmd
