fastas_to_phylos: Create one or more random phylogenies.
In richelbilderbeek/ribir: ribir, basic phylogenetics page

Description Usage Arguments Value Author(s) Examples

Per FASTA file, one random phylogeny is created, with the same taxa names as that FASTA file. All phylogenies have the same crown age.

1	fastas_to_phylos(fasta_filenames, crown_age)

`fasta_filenames`	One or more FASTA filenames. Use `get_fasta_filename` to obtain a testing FASTA filename.
`crown_age`	the crown age of the phylogeny

a multiPhylo with as much phylogenies as there were FASTA filenames. Each phylogeny has the same taxa names as its corresponding FASTA file. All phylogenies have the same crown age.

Richèl J.C. Bilderbeek

  # Create two random phylogies, with
  # - the same taxa names as the FASTA files
  # - the desired crown age
  fasta_filenames <- beautier::get_beautier_paths(
    c("anthus_aco.fas")
  )
  initial_phylogenies <- fastas_to_phylos(
    fasta_filenames,
    crown_age = 15
  )