sim: Simulate an sls process

In richelbilderbeek/splendid: Likelihood model for diversification processes with single lineage rate shifts

Description

Simulate an sls process

Usage

sim(pars, cond = 1, l_2 = sim_get_standard_l_2())

Arguments

pars	parameters of the likelihood functions: pars[1] is lambda_m, i.e. speciation rate of the main clade; pars[2] is mu_m, i.e. extinction rate of the main clade; pars[3] is lambda_s, i.e. speciation rate of the sub clade; pars[4] is mu_s, i.e. extinction rate of the sub clade;
cond	type of conditioning: cond = 0 no conditiong; cond = 1 conditions on the survival of crown descendents; cond = 2 not available; cond = 3 conditions on the survival of subclade and on the other crown descendents in the main clade; cond = 4 conditions on the survival of the subclade and both crown descendents in the main clade;
l_2	the matrix containing the information about how the subclades are nested into the main clade. See sls_sim.get_standard_l_2() for more info.

Value

l_1 table and brts

Author(s)

Giovanni Laudanno

richelbilderbeek/splendid documentation built on May 20, 2019, 9:42 a.m.