Files in richelbilderbeek/splendid
Likelihood model for diversification processes with single lineage rate shifts
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/default_param_doc.R
R/get_pkg_info.R
R/input_lik_conds.R
R/input_logliks.R
R/input_logliks_utils.R
R/input_sim_conds.R
R/input_sim_events.R
R/main.R
R/main_utils.R
R/ml.R
R/sim.R
R/sim_utils.R
R/utils.R
README.md
appveyor.yml
man/cat2.Rd
man/check_input.Rd
man/create_data_file_name.Rd
man/create_results_file_name.Rd
man/default_params_doc.Rd
man/get_conds.Rd
man/get_function_names.Rd
man/get_logliks.Rd
man/get_model_name.Rd
man/get_model_names.Rd
man/get_n_0s.Rd
man/get_param_names.Rd
man/get_pkg_name.Rd
man/get_sim_conds.Rd
man/l_2_brts.Rd
man/lik_cond_0.Rd
man/lik_cond_1.Rd
man/lik_cond_2.Rd
man/lik_cond_3.Rd
man/loglik_dummy.Rd
man/main_save_files.Rd
man/ml.Rd
man/p_transition_matrix.Rd
man/pars_transform_back.Rd
man/pars_transform_forward.Rd
man/print_info.Rd
man/sim.Rd
man/sim_adapt_l_matrix_size.Rd
man/sim_check_survival.Rd
man/sim_cond_0.Rd
man/sim_cond_1.Rd
man/sim_cond_2.Rd
man/sim_cond_3.Rd
man/sim_cond_check.Rd
man/sim_conditioning.Rd
man/sim_cut_l_matrix.Rd
man/sim_decide_event.Rd
man/sim_event.Rd
man/sim_events.Rd
man/sim_get_brts.Rd
man/sim_get_motherclade.Rd
man/sim_get_n_0.Rd
man/sim_get_pars.Rd
man/sim_get_pool.Rd
man/sim_get_shifts_info.Rd
man/sim_get_standard_l_2.Rd
man/sim_get_t_0.Rd
man/sim_initialize_data_new_clade.Rd
man/sim_read_l_1.Rd
man/sim_sample_deltas.Rd
man/sim_use_event.Rd
man/sls_main.Rd
pics/AppVeyor.png
pics/Codecov.png
pics/TravisCI.png
pics/didapper.jpg
pics/didapper2.jpg
splendid.Rproj
tests/testthat.R
tests/testthat/test-main.R
tests/testthat/test-ml.R
tests/testthat/test-pars_transform.R
tests/testthat/test-sim.R
tests/testthat/test-sim_utils.R
tests/testthat/test-style.R
tests/testthat/test-utils.R
vignettes/demo.R
vignettes/demo.Rmd
