NEWS.md

In richelbilderbeek/tmhmm: Interface to TMHMM

News

Newest versions at top.

tmhmm 1.4 (unreleased)

NEW FEATURES

• Added predict_topology_from_sequence and predict_topologies_from_sequences to directly predict topologies from protein sequences
• Added dependency on pureseqtmr, for pureseqtmr::load_fasta_file_as_tibble, which is approximately ten thousand times faster than parse_fasta_file
• Added mock_run_tmhmm to mock run_tmhmm, which is useful in debugging

MINOR IMPROVEMENTS

• None

BUG FIXES

• Allow the prediction of the complete topology for bigger FASTA files, fix #4

DEPRECATED AND DEFUNCT

• locatome_to_df is deprecated, use fasta_text_to_tibble instead
• is_tmhmm_result is deprecated, use is_topology_text instead
• is_locatome_line is deprecated, use is_topology_sequence instead
• parse_fasta_file is deprecated, use pureseqtmr::load_fasta_file_as_tibble instead
• Replace the argument name locatome by the more descriptive topology_text

tmhmm 1.3 (2020-10-08)

NEW FEATURES

• Add tally_tmhs
• Add CONTRIBUTING.md
• Add Code Of Conduct

MINOR IMPROVEMENTS

• locatome_to_df returns a table with a column named 'topology', instead of the less clear 'locatome'

BUG FIXES

• run_tmhmm_on_sequence returns a topology with the same length as the protein sequence (#3)

DEPRECATED AND DEFUNCT

• None

tmhmm 1.2 (2020-09-15)

NEW FEATURES

• Add NEWS.md

MINOR IMPROVEMENTS

• Give proper error when having a question mark in the protein sequence (#2)

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

richelbilderbeek/tmhmm documentation built on Sept. 3, 2022, 5:14 p.m.