calc_summary_stats_traces: Calculates the Effective Sample Sizes of the traces of...

In richelbilderbeek/tracerer: Tracer from R

Calculates the Effective Sample Sizes of the traces of multiple estimated variables.

Description

Calculates the Effective Sample Sizes of the traces of multiple estimated variables.

Usage

calc_summary_stats_traces(traces, sample_interval)

Arguments

traces	a data frame with traces of estimated parameters. Assumes the burn-ins are removed.
sample_interval	the interval in timesteps between samples

Value

the effective sample sizes

Author(s)

Richèl J.C. Bilderbeek

See Also

Use remove_burn_ins to remove the burn-ins of all traces

Examples

estimates_all <- parse_beast_tracelog_file(
  get_tracerer_path("beast2_example_output.log")
)
estimates <- remove_burn_ins(estimates_all, burn_in_fraction = 0.1)

calc_summary_stats_traces(
  estimates,
  sample_interval = 1000
)

richelbilderbeek/tracerer documentation built on Oct. 2, 2023, 7:32 a.m.