API for richelbilderbeek/wiritttes
WIRITTE simulation

Global functions
a2i Man page Source code
add_alignments Man page Source code
add_pbd_output Man page Source code
add_pbd_output_iff_absent Man page Source code
add_posteriors Man page Source code
add_species_trees Man page Source code
alignment_to_beast_input_file Man page Source code
alignment_to_beast_posterior Man page Source code
are_identical_posteriors Man page Source code
are_identical_trees_posteriors Man page Source code
are_valid_files Man page Source code
convert_alignment_to_fasta Man page Source code
convert_phylogeny_to_alignment Man page Source code
create_parameter_files_article Man page Source code
create_parameter_files_timings Man page Source code
create_test_parameter_files Man page Source code
do_simulation Man page Source code
do_test_simulations Man page Source code
extract_age Man page Source code
extract_crown_age Man page Source code
extract_erg Man page Source code
extract_eri Man page Source code
extract_fixed_crown_age Man page Source code
extract_mutation_rate Man page Source code
extract_napst Man page Source code
extract_nppa Man page Source code
extract_nspp Man page Source code
extract_parameters Man page Source code
extract_scr Man page Source code
extract_seed Man page Source code
extract_sequence_length Man page Source code
extract_sirg Man page Source code
extract_siri Man page Source code
file_has_valid_parameters Man page Source code
find_beast_jar_path Man page Source code
find_path Man page Source code
find_paths Man page Source code
get_alignment Man page Source code
get_alignment_by_index Man page Source code
get_alignments Man page Source code
get_pbd_output Man page Source code
get_phylogeny_crown_age Man page Source code
get_posterior Man page Source code
get_posterior_by_index Man page Source code
get_posterior_tree Man page Source code
get_posteriors Man page Source code
get_species_tree_by_index Man page Source code
get_species_tree_oldest Man page Source code
get_species_tree_youngest Man page Source code
has_alignments Man page Source code
has_beast2 Man page Source code
has_species_trees Man page Source code
is_valid_file Man page Source code
nrbs Man page Source code
p2i Man page Source code
read_file Man page Source code
read_files Man page Source code
save_parameters_to_file Man page Source code
set_alignment Man page Source code
set_alignment_by_index Man page Source code
set_posterior Man page Source code
set_posterior_by_index Man page Source code
set_species_tree_by_index Man page Source code
richelbilderbeek/wiritttes documentation built on Sept. 29, 2017, 11:05 p.m.