nrbs: Calculates the Normalized Rooted Branch Score (NRBS)
In richelbilderbeek/wiritttes: WIRITTE simulation
Description
Usage
Arguments
Details
Value
Author(s)
References
Description
Calculates the Normalized Rooted Branch Score (NRBS)
Usage
1
nrbs(phylogeny1, phylogeny2)
Arguments
phylogeny1
the first phylogeny of type 'phylo'
phylogeny2
the other phylogeny of type 'phylo'
Details
The NRBS 'is the rooted equivalent of the branch score metric suggested
by Kuhner and Felsenstein' (quoted from Heled & Drummond, 2010).
phangorn::KF.dist returns by default the unrooted value,
but can be changed to return the rooted value
Value
the normalized rooted branch score
Author(s)
Richel Bilderbeek
References
Heled, Joseph, and Alexei J. Drummond. "Bayesian inference of species
trees from multilocus data." Molecular biology and
evolution 27.3 (2010): 570-580.
Kuhner, Mary K., and Joseph Felsenstein. "A simulation comparison of
phylogeny algorithms under equal and unequal evolutionary
rates." Molecular Biology and Evolution 11.3 (1994): 459-468.
richelbilderbeek/wiritttes documentation built on May 27, 2019, 8:14 a.m.
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Description Usage Arguments Details Value Author(s) References
Description
Calculates the Normalized Rooted Branch Score (NRBS)
Usage
1 | nrbs(phylogeny1, phylogeny2)
|
Arguments
phylogeny1 |
the first phylogeny of type 'phylo' |
phylogeny2 |
the other phylogeny of type 'phylo' |
Details
The NRBS 'is the rooted equivalent of the branch score metric suggested by Kuhner and Felsenstein' (quoted from Heled & Drummond, 2010). phangorn::KF.dist returns by default the unrooted value, but can be changed to return the rooted value
Value
the normalized rooted branch score
Author(s)
Richel Bilderbeek
References
Heled, Joseph, and Alexei J. Drummond. "Bayesian inference of species trees from multilocus data." Molecular biology and evolution 27.3 (2010): 570-580. Kuhner, Mary K., and Joseph Felsenstein. "A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates." Molecular Biology and Evolution 11.3 (1994): 459-468.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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