richfitz/diversitree: Comparative 'Phylogenetic' Analyses of Diversification

Contains a number of comparative 'phylogenetic' methods, mostly focusing on analysing diversification and character evolution. Contains implementations of 'BiSSE' (Binary State 'Speciation' and Extinction) and its unresolved tree extensions, 'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE', 'GeoSSE', and 'BiSSE-ness' Other included methods include Markov models of discrete and continuous trait evolution and constant rate 'speciation' and extinction.

Getting started

Package details

AuthorRichard G. FitzJohn <[email protected]>, with 'GeoSSE' and 'ClaSSE' by Emma E. Goldberg <[email protected]>, and 'BiSSE-ness' by Karen Magnuson-Ford.
MaintainerRichard G. FitzJohn <[email protected]>
LicenseGPL (>= 2)
Version0.9-10
URL http://www.zoology.ubc.ca/prog/diversitree
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("richfitz/diversitree")
richfitz/diversitree documentation built on May 25, 2017, 2:11 a.m.