Files in richrr/TransNetDemo
An Introduction to Transkingdom Network Analysis

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/Apply_sign_cutoffs.R R/Calc_bipartite_betweeness_centrality.R R/Calc_combined.R R/Calc_cor.R R/Calc_median_val.R R/Check_consistency.R R/Compare_groups.R R/Correlation_in_group.R R/Diff_abundance.R R/Get_shortest_paths.R R/Get_template_matrix.R R/Identify_subnetworks.R R/Puc_compatiable_network.R README.md
TransNetDemo.Rproj
data/Comp_genes_precomputed_1.rda
data/Comp_genes_precomputed_2.rda
data/Comp_microbes_precomputed_1.rda
data/Comp_microbes_precomputed_2.rda
data/Corr_gene_microbe_pairs_precomputed_1.rda
data/Corr_gene_microbe_pairs_precomputed_2.rda
data/Corr_genepairs_precomputed_1.rda
data/Corr_genepairs_precomputed_2.rda
data/Corr_microbepairs_precomputed_1.rda
data/Corr_microbepairs_precomputed_2.rda
data/Gene_Microbe_network_precomputed.rda
data/Gene_df_precomputed.rda
data/Gene_network_precomputed.rda
data/Microbe_df_precomputed.rda
data/Microbe_network_precomputed.rda
data/Sign_gene_microbe_pairs_metaanalysis_precomputed.rda
data/Sign_genepairs_metaanalysis_precomputed.rda
data/Sign_genes_metaanalysis_precomputed.rda
data/Sign_genes_precomputed_1.rda
data/Sign_microbepairs_metaanalysis_precomputed.rda
data/Sign_microbes_metaanalysis_precomputed.rda
data/Sign_microbes_precomputed_1.rda
data/TK_Network_precomputed.rda
data/genes_mcode_cluster1_precomputed.rda
data/microbes_mcode_cluster1_precomputed.rda
inst/demo/GeneDemo.R inst/demo/GeneMicrobeDemo.R inst/demo/Heatmaps.R inst/demo/MicrobeDemo.R
inst/extdata/gene_file_1.tsv
inst/extdata/gene_file_2.tsv
inst/extdata/gene_microbe_file_1.tsv
inst/extdata/gene_microbe_file_2.tsv
inst/extdata/mapping_file.rand.1.tsv
inst/extdata/mapping_file.rand.2.tsv
inst/extdata/microbe_file_1.tsv
inst/extdata/microbe_file_2.tsv
man/Apply_sign_cutoffs.Rd man/Calc_bipartite_betweeness_centrality.Rd man/Calc_combined.Rd man/Calc_cor.Rd man/Calc_median_val.Rd man/Check_consistency.Rd man/Compare_groups.Rd man/Correlation_in_group.Rd man/Diff_abundance.Rd man/Get_shortest_paths.Rd man/Get_template_matrix.Rd man/Identify_subnetworks.Rd man/Puc_compatible_network.Rd
richrr/TransNetDemo documentation built on May 25, 2017, 3:17 a.m.