Files in richrr/TransNetDemo
An Introduction to Transkingdom Network Analysis
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/Apply_sign_cutoffs.R
R/Calc_bipartite_betweeness_centrality.R
R/Calc_combined.R
R/Calc_cor.R
R/Calc_median_val.R
R/Check_consistency.R
R/Compare_groups.R
R/Correlation_in_group.R
R/Diff_abundance.R
R/Get_shortest_paths.R
R/Get_template_matrix.R
R/Identify_subnetworks.R
R/Puc_compatiable_network.R
README.md
TransNetDemo.Rproj
data/Comp_genes_precomputed_1.rda
data/Comp_genes_precomputed_2.rda
data/Comp_microbes_precomputed_1.rda
data/Comp_microbes_precomputed_2.rda
data/Corr_gene_microbe_pairs_precomputed_1.rda
data/Corr_gene_microbe_pairs_precomputed_2.rda
data/Corr_genepairs_precomputed_1.rda
data/Corr_genepairs_precomputed_2.rda
data/Corr_microbepairs_precomputed_1.rda
data/Corr_microbepairs_precomputed_2.rda
data/Gene_Microbe_network_precomputed.rda
data/Gene_df_precomputed.rda
data/Gene_network_precomputed.rda
data/Microbe_df_precomputed.rda
data/Microbe_network_precomputed.rda
data/Sign_gene_microbe_pairs_metaanalysis_precomputed.rda
data/Sign_genepairs_metaanalysis_precomputed.rda
data/Sign_genes_metaanalysis_precomputed.rda
data/Sign_genes_precomputed_1.rda
data/Sign_microbepairs_metaanalysis_precomputed.rda
data/Sign_microbes_metaanalysis_precomputed.rda
data/Sign_microbes_precomputed_1.rda
data/TK_Network_precomputed.rda
data/genes_mcode_cluster1_precomputed.rda
data/microbes_mcode_cluster1_precomputed.rda
inst/demo/GeneDemo.R
inst/demo/GeneMicrobeDemo.R
inst/demo/Heatmaps.R
inst/demo/MicrobeDemo.R
inst/extdata/gene_file_1.tsv
inst/extdata/gene_file_2.tsv
inst/extdata/gene_microbe_file_1.tsv
inst/extdata/gene_microbe_file_2.tsv
inst/extdata/mapping_file.rand.1.tsv
inst/extdata/mapping_file.rand.2.tsv
inst/extdata/microbe_file_1.tsv
inst/extdata/microbe_file_2.tsv
man/Apply_sign_cutoffs.Rd
man/Calc_bipartite_betweeness_centrality.Rd
man/Calc_combined.Rd
man/Calc_cor.Rd
man/Calc_median_val.Rd
man/Check_consistency.Rd
man/Compare_groups.Rd
man/Correlation_in_group.Rd
man/Diff_abundance.Rd
man/Get_shortest_paths.Rd
man/Get_template_matrix.Rd
man/Identify_subnetworks.Rd
man/Puc_compatible_network.Rd
