An Introduction to Transkingdom Network Analysis

Apply_sign_cutoffs | Select significant elements |

Calc_bipartite_betweeness_centrality | Calc_bipartite_betweeness_centrality |

Calc_combined | Calc combined p value across expts. |

Calc_cor | Calculate correlation between vectors |

Calc_median_val | Calculate median coefficient or fold change |

Check_consistency | Check consistent direction |

Compare_groups | Compare groups |

Correlation_in_group | Correlation_in_group |

Diff_abundance | Compare abundance between groups for an element |

Get_shortest_paths | Get counts for all shortest paths between given nodes in a... |

Get_template_matrix | Get_template_matrix |

Identify_subnetworks | Identify top subnetwork |

Puc_compatible_network | Calculate network that satisfies the PUC criteria |

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