Man pages for richysix/rnaseqVis
Viewer for RNASeq gene expression data
| clusterApp | A test shiny app for the cluster module |
| cluster_genes | Cluster a gene count matrix |
| clusterInput | Create UI components to select whether to cluster a matrix by... |
| clusterServer | Server function to cluster a count matrix by rows and/or... |
| countPlotApp | A test shiny app for the countPlot module |
| countPlotInput | Create UI components to display a count plot for a selected... |
| countPlotOutput | Create UI components to display a count plot for a selected... |
| countPlotServer | Server function to create a count plot for a given gene |
| create_count_plot | Make scatterplot of normalised counts |
| create_fill_palette | Make a vector of colours based on a character vector |
| create_shape_palette | Make a vector of numbers representing shapes based on a... |
| get_gene_labels | Get labels for heatmap axis labels |
| heatmapApp | A test shiny app for the heatmap module |
| heatmapOutput | Create UI components to display heatmap of a matrix of values |
| heatmapServer | Server function to create a heatmap of a count matrix |
| load_gene_ids | Load a file of gene ids |
| max_scale | Scale count according to the maximum value |
| RemoveZeroVariance | RemoveZeroVariance |
| rnaseqVis-package | rnaseqVis: Viewer for RNASeq gene expression data |
| SubsetByGeneIDsApp | A test shiny app for the SubsetByGeneIDs module |
| SubsetByGeneIDsInput | Create UI components to upload a file to use to subset the... |
| SubsetByGeneIDsOutput | Create UI components to upload a file to use to subset the... |
| SubsetByGeneIDsServer | Server function to upload a file to use to subset the data |
| transformApp | A test shiny app for the transform module |
| transform_counts | Transform counts with the supplied function name |
| transformInput | Create UI components to select a transformation function for... |
| transformServer | Server function to transform a count matrix with a selected... |
| uploadRNASeqApp | A test shiny app for the uploadRNASeq module |
| uploadRNASeqInput | Create UI components to upload sample and count files |
| uploadRNASeqOutput | Create Output to display uploaded sample and count data |
| uploadRNASeqServer | Server function to upload sample and count data files |
