Man pages for richysix/rnaseqtools
Helpers for dealing with our RNA-seq output
| check_samples | See if sample and count data.frames have matching samples |
| countsToTPM | Convert a numeric matrix of features (rows) and conditions... |
| get_cols | Get columns from an RNA-seq dataset |
| get_counts | Get count data for an RNA-seq dataset |
| get_gene_metadata | Get non count data for an RNA-seq dataset |
| get_tpms | Get TPM data for an RNA-seq dataset |
| load_data | Load data |
| load_detct_data | Load DeTCT count data in from file |
| load_rnaseq_data | Load RNA-seq count data in from file |
| load_rnaseq_samples | Load RNA-seq samples file |
| load_tpm_data | Load RNA-seq TPM data in from file |
| normalise_counts | Adjust RNAseq count data for library size |
| pipe | Pipe operator |
| set_col_types | Set the column types based on the column names |
| standardise_colnames | Standardise count file column names |
| subset_to_samples | Subset an RNA-seq dataset using a samples file |
