subset_to_samples: Subset an RNA-seq dataset using a samples file

In richysix/rnaseqtools: Helpers for dealing with our RNA-seq output

Subset an RNA-seq dataset using a samples file

Description

subset_to_samples returns a data.frame of metadata, counts and normalised counts subset to the supplied sample data frame

Usage

subset_to_samples(
  data,
  samples,
  counts = TRUE,
  normalised_counts = TRUE,
  tpm = FALSE
)

Arguments

data	df rna-seq data to get counts from
samples	df a samples df to subset the data to
counts	logical indicating whether to include raw counts in the results
normalised_counts	logical indicating whether to include normalised counts in the results
tpm	logical indicating whether to include tpm values in the results

Value

data.frame

Examples

non_count_data <- subset_to_samples(data, samples)

richysix/rnaseqtools documentation built on Jan. 26, 2025, 10:14 a.m.